PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529976.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 353aa MW: 38332.7 Da PI: 7.9759

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.6	2.8e-13	94	138	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r ++Rt+ q+ s+ qky XP_010529976.1 94 PWTEEEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKY 138 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.713	87	143	IPR017930	Myb domain
SuperFamily	SSF46689	2.39E-17	89	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-18	90	142	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.0E-11	91	138	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-11	91	141	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-11	94	138	IPR001005	SANT/Myb domain
CDD	cd00167	2.50E-9	94	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MTRRCSHCNL NGHNSRTCPN RGVKLFGVRL TEGSIRKSAS MGNLSHYAGG HSGTGSNYPG 60 SPGDTPDHAA GDGYASEDFV SGPSSSRERK KGTPWTEEEH RMFLLGLQKL GKGDWRGISR 120 NYVTTRTPTQ VASHAQKYFM RQSNVSRRKR RSSLFDMVPD EISDVPMEPQ LVNCHTETQI 180 QGNDPLPVLP PAPVPVIAPS IPRTEECESM DSTKSSTGEP PMAAATASSS SKAEENKPLQ 240 LPASFPVLYP TYFSPFSSFP VPIWPAVGYI PEPAQKEEVH EIHRPRAVHS KAPINVDELL 300 GISKLTLGES IRDSEQSRSL TLTGGSSSSS RQSAFHPNPA SDSSDMNSPI HAV

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MTRRCSHCNL NGHNSRTCPN RGVKLFGVRL TEGSIRKSAS MGNLSHYAGG HSGTGSNYPG  60
SPGDTPDHAA GDGYASEDFV SGPSSSRERK KGTPWTEEEH RMFLLGLQKL GKGDWRGISR  120
NYVTTRTPTQ VASHAQKYFM RQSNVSRRKR RSSLFDMVPD EISDVPMEPQ LVNCHTETQI  180
QGNDPLPVLP PAPVPVIAPS IPRTEECESM DSTKSSTGEP PMAAATASSS SKAEENKPLQ  240
LPASFPVLYP TYFSPFSSFP VPIWPAVGYI PEPAQKEEVH EIHRPRAVHS KAPINVDELL  300
GISKLTLGES IRDSEQSRSL TLTGGSSSSS RQSAFHPNPA SDSSDMNSPI HAV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529976.1	0.0	PREDICTED: protein REVEILLE 8-like
TrEMBL	R0EUD4	1e-179	R0EUD4_9BRAS; Uncharacterized protein
STRING	AT5G47390.1	1e-175	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3426	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-163	MYB_related family protein